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I have been struggling to install niftynet on my old windows 7, and always got error messages back. Here is the procedure that works:
Ok to install the latest dev
version,
now this should work (with cpu-only) :
conda create -n nntest python=3.5
source activate nntest
pip install tensorflow==1.7
pip install -r https://raw.githubusercontent.com/NifTK/NiftyNet/dev/requirements-cpu.txt
pip install git+https://github.com/NifTK/NiftyNet.git
with gpu:
conda create -n nntest python=3.5
source activate nntest
pip install tensorflow-gpu==1.7
pip install -r https://raw.githubusercontent.com/NifTK/NiftyNet/dev/requirements-gpu.txt
pip install git+https://github.com/NifTK/NiftyNet.gitactivate niftynet
conda install nb_conda_kernels
jupyter notebook
deactivate at the end.
to create a new environment (let’s say the env name is N here)from file:
activate N
conda create -f n.yml #n.txt doesn’t work here
conda env remove -n N
conda env create -f n.yml -n N # you will need to explicitly give a name here
if you want to install everything in one go:
Once you install all the packages to your environment, you can:
conda env export > env_all_setup_files.yml
Then run:
conda env create -f env_all_setup_files.yml -n your_env_name
that will install everything, including niftynet in one go.
You may need to install SimpleITK and nb_conda_kernels manually before you start your notebook.
pip install SimpleITKconda install nb_conda_kernelsjupyter notebook